AFN46159.1 protein (Pseudopropionibacterium propionicum)

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Score

AFN46159.1

Cold-shock DNA-binding domain protein. (68 aa)

Predicted Functional Partners:

AFN45506.1

0.795

tuf

0.774

rpsL

0.732

rplO

0.724

AFN45656.1

0.718

rpmJ

0.700

rpsB

0.678

rpsO

0.674

rplA

0.671

rpmE_1

0.657

Your Current Organism:

Pseudopropionibacterium propionicum

NCBI taxonomy Id: 767029
Other names: P. propionicum F0230a, Propionibacterium propionicum F0230a, Pseudopropionibacterium propionicum F0230a

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFN45506.1	AFN45656.1	HMPREF9154_0735	HMPREF9154_1517	Cold-shock DNA-binding domain protein.	Putative DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	0.611
AFN45506.1	AFN46159.1	HMPREF9154_0735	HMPREF9154_1520	Cold-shock DNA-binding domain protein.	Cold-shock DNA-binding domain protein.	0.795
AFN45506.1	rplA	HMPREF9154_0735	HMPREF9154_2310	Cold-shock DNA-binding domain protein.	Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.415
AFN45506.1	rplO	HMPREF9154_0735	HMPREF9154_2238	Cold-shock DNA-binding domain protein.	Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.531
AFN45506.1	rpmE_1	HMPREF9154_0735	HMPREF9154_1408	Cold-shock DNA-binding domain protein.	Ribosomal protein L31; Binds the 23S rRNA.	0.491
AFN45506.1	rpmJ	HMPREF9154_0735	HMPREF9154_2229	Cold-shock DNA-binding domain protein.	Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.	0.501
AFN45506.1	rpsB	HMPREF9154_0735	HMPREF9154_1109	Cold-shock DNA-binding domain protein.	Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.493
AFN45506.1	rpsL	HMPREF9154_0735	HMPREF9154_2291	Cold-shock DNA-binding domain protein.	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.577
AFN45506.1	rpsO	HMPREF9154_0735	HMPREF9154_1282	Cold-shock DNA-binding domain protein.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.580
AFN45506.1	tuf	HMPREF9154_0735	HMPREF9154_2286	Cold-shock DNA-binding domain protein.	Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.530
AFN45656.1	AFN45506.1	HMPREF9154_1517	HMPREF9154_0735	Putative DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	Cold-shock DNA-binding domain protein.	0.611
AFN45656.1	AFN46159.1	HMPREF9154_1517	HMPREF9154_1520	Putative DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	Cold-shock DNA-binding domain protein.	0.718
AFN45656.1	rplA	HMPREF9154_1517	HMPREF9154_2310	Putative DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.543
AFN45656.1	rplO	HMPREF9154_1517	HMPREF9154_2238	Putative DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.919
AFN45656.1	rpsB	HMPREF9154_1517	HMPREF9154_1109	Putative DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.570
AFN45656.1	rpsL	HMPREF9154_1517	HMPREF9154_2291	Putative DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.569
AFN45656.1	rpsO	HMPREF9154_1517	HMPREF9154_1282	Putative DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.705
AFN46159.1	AFN45506.1	HMPREF9154_1520	HMPREF9154_0735	Cold-shock DNA-binding domain protein.	Cold-shock DNA-binding domain protein.	0.795
AFN46159.1	AFN45656.1	HMPREF9154_1520	HMPREF9154_1517	Cold-shock DNA-binding domain protein.	Putative DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.	0.718
AFN46159.1	rplA	HMPREF9154_1520	HMPREF9154_2310	Cold-shock DNA-binding domain protein.	Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.671