Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFN45339.1 | gyrB_2 | HMPREF9154_1523 | HMPREF9154_1524 | Hypothetical protein. | DNA gyrase, B subunit. | 0.720 |
AFN46092.1 | AFN46888.1 | HMPREF9154_1940 | HMPREF9154_1527 | HRDC domain protein. | DNA gyrase/topoisomerase IV, A subunit. | 0.432 |
AFN46092.1 | AFN47463.1 | HMPREF9154_1940 | HMPREF9154_1027 | HRDC domain protein. | KR domain protein. | 0.928 |
AFN46092.1 | dnaK | HMPREF9154_1940 | HMPREF9154_2565 | HRDC domain protein. | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.401 |
AFN46092.1 | gyrB_2 | HMPREF9154_1940 | HMPREF9154_1524 | HRDC domain protein. | DNA gyrase, B subunit. | 0.649 |
AFN46092.1 | pheT | HMPREF9154_1940 | HMPREF9154_2036 | HRDC domain protein. | phenylalanine--tRNA ligase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.863 |
AFN46092.1 | polA | HMPREF9154_1940 | HMPREF9154_1906 | HRDC domain protein. | DNA polymerase I, thermostable; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.997 |
AFN46092.1 | recA | HMPREF9154_1940 | HMPREF9154_1371 | HRDC domain protein. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.986 |
AFN46092.1 | rpoB | HMPREF9154_1940 | HMPREF9154_2293 | HRDC domain protein. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.859 |
AFN46888.1 | AFN46092.1 | HMPREF9154_1527 | HMPREF9154_1940 | DNA gyrase/topoisomerase IV, A subunit. | HRDC domain protein. | 0.432 |
AFN46888.1 | AFN47463.1 | HMPREF9154_1527 | HMPREF9154_1027 | DNA gyrase/topoisomerase IV, A subunit. | KR domain protein. | 0.526 |
AFN46888.1 | dnaK | HMPREF9154_1527 | HMPREF9154_2565 | DNA gyrase/topoisomerase IV, A subunit. | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.715 |
AFN46888.1 | gyrB_2 | HMPREF9154_1527 | HMPREF9154_1524 | DNA gyrase/topoisomerase IV, A subunit. | DNA gyrase, B subunit. | 0.991 |
AFN46888.1 | pheT | HMPREF9154_1527 | HMPREF9154_2036 | DNA gyrase/topoisomerase IV, A subunit. | phenylalanine--tRNA ligase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.703 |
AFN46888.1 | polA | HMPREF9154_1527 | HMPREF9154_1906 | DNA gyrase/topoisomerase IV, A subunit. | DNA polymerase I, thermostable; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.527 |
AFN46888.1 | recA | HMPREF9154_1527 | HMPREF9154_1371 | DNA gyrase/topoisomerase IV, A subunit. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.534 |
AFN46888.1 | rpoB | HMPREF9154_1527 | HMPREF9154_2293 | DNA gyrase/topoisomerase IV, A subunit. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.589 |
AFN47463.1 | AFN46092.1 | HMPREF9154_1027 | HMPREF9154_1940 | KR domain protein. | HRDC domain protein. | 0.928 |
AFN47463.1 | AFN46888.1 | HMPREF9154_1027 | HMPREF9154_1527 | KR domain protein. | DNA gyrase/topoisomerase IV, A subunit. | 0.526 |
AFN47463.1 | dnaK | HMPREF9154_1027 | HMPREF9154_2565 | KR domain protein. | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.852 |
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