Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFN47174.1Response regulator receiver domain protein. (224 aa)    
Predicted Functional Partners:
AFN45290.1
Histidine kinase.
 
   0.929
AFN45371.1
Histidine kinase.
  
   0.783
AFN47082.1
Histidine kinase.
  
   0.782
AFN46024.1
Putative bacitracin ABC transporter, ATP-binding protein BcrA.
  
    0.773
AFN45916.1
Hypothetical protein.
       0.773
AFN46120.1
Putative membrane protein.
       0.773
AFN44987.1
Histidine kinase.
  
   0.763
AFN47263.1
Histidine kinase.
  
   0.757
AFN45602.1
Hypothetical protein.
  
   0.734
AFN46837.1
Histidine kinase.
  
   0.713
Your Current Organism:
Pseudopropionibacterium propionicum
NCBI taxonomy Id: 767029
Other names: P. propionicum F0230a, Propionibacterium propionicum F0230a, Pseudopropionibacterium propionicum F0230a
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