AFN46552.1 protein (Pseudopropionibacterium propionicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AFN46552.1

Putative transmembrane permease MsmF. (297 aa)

Predicted Functional Partners:

AFN47229.1

0.976

AFN47234.1

0.975

AFN44964.1

0.897

AFN47695.1

0.897

AFN46959.1

0.896

AFN44931.1

0.895

AFN47374.1

0.886

AFN45759.1

0.853

AFN47127.1

0.837

AFN46501.1

0.791

Your Current Organism:

Pseudopropionibacterium propionicum

NCBI taxonomy Id: 767029
Other names: P. propionicum F0230a, Propionibacterium propionicum F0230a, Pseudopropionibacterium propionicum F0230a

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFN44931.1	AFN45759.1	HMPREF9154_1445	HMPREF9154_0719	ABC transporter, permease protein.	TOBE domain protein; Belongs to the ABC transporter superfamily.	0.863
AFN44931.1	AFN46501.1	HMPREF9154_1445	HMPREF9154_1674	ABC transporter, permease protein.	TOBE domain protein; Belongs to the ABC transporter superfamily.	0.804
AFN44931.1	AFN46552.1	HMPREF9154_1445	HMPREF9154_1746	ABC transporter, permease protein.	Putative transmembrane permease MsmF.	0.895
AFN44931.1	AFN47234.1	HMPREF9154_1445	HMPREF9154_1745	ABC transporter, permease protein.	ABC transporter, solute-binding protein.	0.625
AFN44964.1	AFN45759.1	HMPREF9154_0156	HMPREF9154_0719	ABC transporter, permease protein.	TOBE domain protein; Belongs to the ABC transporter superfamily.	0.900
AFN44964.1	AFN46501.1	HMPREF9154_0156	HMPREF9154_1674	ABC transporter, permease protein.	TOBE domain protein; Belongs to the ABC transporter superfamily.	0.874
AFN44964.1	AFN46552.1	HMPREF9154_0156	HMPREF9154_1746	ABC transporter, permease protein.	Putative transmembrane permease MsmF.	0.897
AFN44964.1	AFN47234.1	HMPREF9154_0156	HMPREF9154_1745	ABC transporter, permease protein.	ABC transporter, solute-binding protein.	0.566
AFN45759.1	AFN44931.1	HMPREF9154_0719	HMPREF9154_1445	TOBE domain protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.863
AFN45759.1	AFN44964.1	HMPREF9154_0719	HMPREF9154_0156	TOBE domain protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.900
AFN45759.1	AFN46501.1	HMPREF9154_0719	HMPREF9154_1674	TOBE domain protein; Belongs to the ABC transporter superfamily.	TOBE domain protein; Belongs to the ABC transporter superfamily.	0.910
AFN45759.1	AFN46552.1	HMPREF9154_0719	HMPREF9154_1746	TOBE domain protein; Belongs to the ABC transporter superfamily.	Putative transmembrane permease MsmF.	0.853
AFN45759.1	AFN46959.1	HMPREF9154_0719	HMPREF9154_2935	TOBE domain protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.888
AFN45759.1	AFN47127.1	HMPREF9154_0719	HMPREF9154_1675	TOBE domain protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.908
AFN45759.1	AFN47229.1	HMPREF9154_0719	HMPREF9154_1747	TOBE domain protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.876
AFN45759.1	AFN47234.1	HMPREF9154_0719	HMPREF9154_1745	TOBE domain protein; Belongs to the ABC transporter superfamily.	ABC transporter, solute-binding protein.	0.670
AFN45759.1	AFN47374.1	HMPREF9154_0719	HMPREF9154_2557	TOBE domain protein; Belongs to the ABC transporter superfamily.	Putative maltose transport system permease protein MalG.	0.979
AFN45759.1	AFN47695.1	HMPREF9154_0719	HMPREF9154_0308	TOBE domain protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.896
AFN46501.1	AFN44931.1	HMPREF9154_1674	HMPREF9154_1445	TOBE domain protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.804
AFN46501.1	AFN44964.1	HMPREF9154_1674	HMPREF9154_0156	TOBE domain protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.874