Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AFN45529.1 | AFN46479.1 | HMPREF9154_1947 | HMPREF9154_0681 | Sigma-70, region 3; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | CarD-like protein. | 0.927 |
| AFN45529.1 | AFN46694.1 | HMPREF9154_1947 | HMPREF9154_2371 | Sigma-70, region 3; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Bacterial transcription activator, effector-binding domain protein. | 0.945 |
| AFN45529.1 | dnaG | HMPREF9154_1947 | HMPREF9154_1460 | Sigma-70, region 3; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.910 |
| AFN45529.1 | lepA | HMPREF9154_1947 | HMPREF9154_1749 | Sigma-70, region 3; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. | 0.649 |
| AFN45529.1 | rbpA-2 | HMPREF9154_1947 | HMPREF9154_1584 | Sigma-70, region 3; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. | 0.953 |
| AFN45529.1 | rpoA | HMPREF9154_1947 | HMPREF9154_2225 | Sigma-70, region 3; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.963 |
| AFN45529.1 | rpoB | HMPREF9154_1947 | HMPREF9154_2293 | Sigma-70, region 3; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.980 |
| AFN45529.1 | rpoC | HMPREF9154_1947 | HMPREF9154_2292 | Sigma-70, region 3; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.959 |
| AFN45529.1 | rpoZ | HMPREF9154_1947 | HMPREF9154_1619 | Sigma-70, region 3; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.955 |
| AFN45529.1 | whiB-2 | HMPREF9154_1947 | HMPREF9154_1398 | Sigma-70, region 3; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.858 |
| AFN46479.1 | AFN45529.1 | HMPREF9154_0681 | HMPREF9154_1947 | CarD-like protein. | Sigma-70, region 3; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.927 |
| AFN46479.1 | rbpA-2 | HMPREF9154_0681 | HMPREF9154_1584 | CarD-like protein. | Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. | 0.983 |
| AFN46479.1 | rpoA | HMPREF9154_0681 | HMPREF9154_2225 | CarD-like protein. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.954 |
| AFN46479.1 | rpoB | HMPREF9154_0681 | HMPREF9154_2293 | CarD-like protein. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.955 |
| AFN46479.1 | rpoC | HMPREF9154_0681 | HMPREF9154_2292 | CarD-like protein. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.973 |
| AFN46479.1 | rpoZ | HMPREF9154_0681 | HMPREF9154_1619 | CarD-like protein. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.963 |
| AFN46694.1 | AFN45529.1 | HMPREF9154_2371 | HMPREF9154_1947 | Bacterial transcription activator, effector-binding domain protein. | Sigma-70, region 3; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.945 |
| AFN46694.1 | rpoA | HMPREF9154_2371 | HMPREF9154_2225 | Bacterial transcription activator, effector-binding domain protein. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.948 |
| AFN46694.1 | rpoB | HMPREF9154_2371 | HMPREF9154_2293 | Bacterial transcription activator, effector-binding domain protein. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.950 |
| AFN46694.1 | rpoC | HMPREF9154_2371 | HMPREF9154_2292 | Bacterial transcription activator, effector-binding domain protein. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.948 |
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