Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFN46675.1Hypothetical protein. (50 aa)    
Predicted Functional Partners:
AFN47138.1
Transporter, major facilitator family protein.
       0.608
AFN45595.1
FAD binding domain protein.
       0.529
AFN47072.1
AP endonuclease, family 2.
       0.529
AFN47493.1
Putative acetolactate synthase isozyme 2 large subunit; Belongs to the TPP enzyme family.
       0.456
AFN46107.1
Citrate (Si)-synthase domain protein.
       0.456
AFN45800.1
Aldehyde-alcohol dehydrogenase family protein.
       0.456
AFN47796.1
AP endonuclease, family 2.
       0.419
aroK_2
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.411
Your Current Organism:
Pseudopropionibacterium propionicum
NCBI taxonomy Id: 767029
Other names: P. propionicum F0230a, Propionibacterium propionicum F0230a, Pseudopropionibacterium propionicum F0230a
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