Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFN46387.1ABC transporter, substrate-binding protein, family 5. (608 aa)    
Predicted Functional Partners:
AFN46419.1
Putative oligopeptide ABC transporter, permease protein AppB.
 
 0.989
AFN45965.1
Putative oligopeptide ABC transporter, permease protein AppC.
 
 0.987
AFN45141.1
Oligopeptide/dipeptide transporter, C-terminal domain protein; Belongs to the ABC transporter superfamily.
 
 
 0.882
nifJ
Pyruvate synthase.
  
    0.726
AFN46513.1
ABC transporter, ATP-binding protein.
 
 
 0.665
AFN44927.1
Peptidase, S9A/B/C family, catalytic domain protein; Overlaps another CDS with the same product name.
  
     0.659
AFN46033.1
Putative glutathione ABC transporter, permease protein GsiC.
  
 
 0.645
AFN46999.1
ABC transporter, permease protein.
  
 
 0.645
AFN45144.1
ABC transporter, permease protein.
  
 
 0.645
AFN46652.1
Putative glutathione ABC transporter, permease protein GsiC.
  
 
 0.645
Your Current Organism:
Pseudopropionibacterium propionicum
NCBI taxonomy Id: 767029
Other names: P. propionicum F0230a, Propionibacterium propionicum F0230a, Pseudopropionibacterium propionicum F0230a
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