STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFN47425.1CobQ/CobB/MinD/ParA nucleotide binding domain protein. (392 aa)    
Predicted Functional Partners:
eccD
Type VII secretion integral membrane protein EccD.
 
    0.734
AFN46332.1
Hypothetical protein.
  
 
 0.602
AFN47303.1
Hypothetical protein.
 
     0.600
AFN47420.1
Putative type VII secretion integral membrane protein EccD.
 
    0.589
AFN45408.1
TraG/TraD family protein.
 
     0.579
eccCa_2
Type VII secretion protein EccCa.
 
   
 0.500
eccCa_3
Type VII secretion protein EccCa.
 
   
 0.486
AFN46688.1
Hypothetical protein.
       0.450
AFN47369.1
Hypothetical protein.
  
    0.428
AFN46153.1
Putative membrane protein.
  
    0.424
Your Current Organism:
Pseudopropionibacterium propionicum
NCBI taxonomy Id: 767029
Other names: P. propionicum F0230a, Propionibacterium propionicum F0230a, Pseudopropionibacterium propionicum F0230a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.