AFN46971.1 protein (Pseudopropionibacterium propionicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AFN46971.1

Putative lipoprotein ABC transporter, ATP-binding protein. (287 aa)

Predicted Functional Partners:

AFN46336.1

0.961

AFN46486.1

0.837

AFN45867.1

0.641

AFN45643.1

0.533

regX_3

0.529

AFN47428.1

0.508

AFN45104.1

0.500

AFN45182.1

0.497

AFN47401.1

0.492

AFN45261.1

0.485

Your Current Organism:

Pseudopropionibacterium propionicum

NCBI taxonomy Id: 767029
Other names: P. propionicum F0230a, Propionibacterium propionicum F0230a, Pseudopropionibacterium propionicum F0230a

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFN45104.1	AFN46971.1	HMPREF9154_2881	HMPREF9154_2264	Efflux ABC transporter, permease protein.	Putative lipoprotein ABC transporter, ATP-binding protein.	0.500
AFN45182.1	AFN46971.1	HMPREF9154_0813	HMPREF9154_2264	Putative iron(III) dicitrate ABC transporter, ATP-binding protein FecE.	Putative lipoprotein ABC transporter, ATP-binding protein.	0.497
AFN45182.1	AFN47428.1	HMPREF9154_0813	HMPREF9154_1291	Putative iron(III) dicitrate ABC transporter, ATP-binding protein FecE.	ABC transporter, ATP-binding protein.	0.432
AFN45261.1	AFN46336.1	HMPREF9154_2364	HMPREF9154_2263	Efflux ABC transporter, permease protein.	Efflux ABC transporter, permease protein.	0.419
AFN45261.1	AFN46971.1	HMPREF9154_2364	HMPREF9154_2264	Efflux ABC transporter, permease protein.	Putative lipoprotein ABC transporter, ATP-binding protein.	0.485
AFN45643.1	AFN46971.1	HMPREF9154_2717	HMPREF9154_2264	Efflux ABC transporter, permease protein.	Putative lipoprotein ABC transporter, ATP-binding protein.	0.533
AFN45867.1	AFN46486.1	HMPREF9154_2352	HMPREF9154_2265	Efflux ABC transporter, permease protein.	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein.	0.401
AFN45867.1	AFN46971.1	HMPREF9154_2352	HMPREF9154_2264	Efflux ABC transporter, permease protein.	Putative lipoprotein ABC transporter, ATP-binding protein.	0.641
AFN46336.1	AFN45261.1	HMPREF9154_2263	HMPREF9154_2364	Efflux ABC transporter, permease protein.	Efflux ABC transporter, permease protein.	0.419
AFN46336.1	AFN46486.1	HMPREF9154_2263	HMPREF9154_2265	Efflux ABC transporter, permease protein.	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein.	0.885
AFN46336.1	AFN46971.1	HMPREF9154_2263	HMPREF9154_2264	Efflux ABC transporter, permease protein.	Putative lipoprotein ABC transporter, ATP-binding protein.	0.961
AFN46336.1	regX_3	HMPREF9154_2263	HMPREF9154_2266	Efflux ABC transporter, permease protein.	Sensory transduction protein RegX3.	0.616
AFN46486.1	AFN45867.1	HMPREF9154_2265	HMPREF9154_2352	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein.	Efflux ABC transporter, permease protein.	0.401
AFN46486.1	AFN46336.1	HMPREF9154_2265	HMPREF9154_2263	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein.	Efflux ABC transporter, permease protein.	0.885
AFN46486.1	AFN46971.1	HMPREF9154_2265	HMPREF9154_2264	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein.	Putative lipoprotein ABC transporter, ATP-binding protein.	0.837
AFN46486.1	regX_3	HMPREF9154_2265	HMPREF9154_2266	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein.	Sensory transduction protein RegX3.	0.961
AFN46971.1	AFN45104.1	HMPREF9154_2264	HMPREF9154_2881	Putative lipoprotein ABC transporter, ATP-binding protein.	Efflux ABC transporter, permease protein.	0.500
AFN46971.1	AFN45182.1	HMPREF9154_2264	HMPREF9154_0813	Putative lipoprotein ABC transporter, ATP-binding protein.	Putative iron(III) dicitrate ABC transporter, ATP-binding protein FecE.	0.497
AFN46971.1	AFN45261.1	HMPREF9154_2264	HMPREF9154_2364	Putative lipoprotein ABC transporter, ATP-binding protein.	Efflux ABC transporter, permease protein.	0.485
AFN46971.1	AFN45643.1	HMPREF9154_2264	HMPREF9154_2717	Putative lipoprotein ABC transporter, ATP-binding protein.	Efflux ABC transporter, permease protein.	0.533