Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AFN45487.1 | AFN46694.1 | HMPREF9154_0122 | HMPREF9154_2371 | Transcriptional regulator, TetR family. | Bacterial transcription activator, effector-binding domain protein. | 0.535 |
| AFN45529.1 | AFN46694.1 | HMPREF9154_1947 | HMPREF9154_2371 | Sigma-70, region 3; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Bacterial transcription activator, effector-binding domain protein. | 0.945 |
| AFN45529.1 | nifJ | HMPREF9154_1947 | HMPREF9154_0751 | Sigma-70, region 3; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Pyruvate synthase. | 0.518 |
| AFN45529.1 | rpoA | HMPREF9154_1947 | HMPREF9154_2225 | Sigma-70, region 3; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.963 |
| AFN45529.1 | rpoB | HMPREF9154_1947 | HMPREF9154_2293 | Sigma-70, region 3; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.980 |
| AFN45529.1 | rpoC | HMPREF9154_1947 | HMPREF9154_2292 | Sigma-70, region 3; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.959 |
| AFN45529.1 | rpoD | HMPREF9154_1947 | HMPREF9154_1946 | Sigma-70, region 3; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.564 |
| AFN45529.1 | rpoZ | HMPREF9154_1947 | HMPREF9154_1619 | Sigma-70, region 3; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.955 |
| AFN46336.1 | AFN46694.1 | HMPREF9154_2263 | HMPREF9154_2371 | Efflux ABC transporter, permease protein. | Bacterial transcription activator, effector-binding domain protein. | 0.526 |
| AFN46694.1 | AFN45487.1 | HMPREF9154_2371 | HMPREF9154_0122 | Bacterial transcription activator, effector-binding domain protein. | Transcriptional regulator, TetR family. | 0.535 |
| AFN46694.1 | AFN45529.1 | HMPREF9154_2371 | HMPREF9154_1947 | Bacterial transcription activator, effector-binding domain protein. | Sigma-70, region 3; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.945 |
| AFN46694.1 | AFN46336.1 | HMPREF9154_2371 | HMPREF9154_2263 | Bacterial transcription activator, effector-binding domain protein. | Efflux ABC transporter, permease protein. | 0.526 |
| AFN46694.1 | gph | HMPREF9154_2371 | HMPREF9154_2372 | Bacterial transcription activator, effector-binding domain protein. | Glycoside/pentoside/hexuronide transporter. | 0.551 |
| AFN46694.1 | nifJ | HMPREF9154_2371 | HMPREF9154_0751 | Bacterial transcription activator, effector-binding domain protein. | Pyruvate synthase. | 0.659 |
| AFN46694.1 | rpoA | HMPREF9154_2371 | HMPREF9154_2225 | Bacterial transcription activator, effector-binding domain protein. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.948 |
| AFN46694.1 | rpoB | HMPREF9154_2371 | HMPREF9154_2293 | Bacterial transcription activator, effector-binding domain protein. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.950 |
| AFN46694.1 | rpoC | HMPREF9154_2371 | HMPREF9154_2292 | Bacterial transcription activator, effector-binding domain protein. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.948 |
| AFN46694.1 | rpoD | HMPREF9154_2371 | HMPREF9154_1946 | Bacterial transcription activator, effector-binding domain protein. | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.945 |
| AFN46694.1 | rpoZ | HMPREF9154_2371 | HMPREF9154_1619 | Bacterial transcription activator, effector-binding domain protein. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.948 |
| gph | AFN46694.1 | HMPREF9154_2372 | HMPREF9154_2371 | Glycoside/pentoside/hexuronide transporter. | Bacterial transcription activator, effector-binding domain protein. | 0.551 |
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