Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AFN45298.1 | AFN46517.1 | HMPREF9154_2520 | HMPREF9154_2519 | Serine protease do-like HtrA family protein. | Ribosomal protein L11 methyltransferase-like protein; Belongs to the methyltransferase superfamily. | 0.529 |
| AFN45792.1 | AFN46079.1 | HMPREF9154_2081 | HMPREF9154_2555 | Hypothetical protein. | Hypothetical protein. | 0.642 |
| AFN45792.1 | AFN46517.1 | HMPREF9154_2081 | HMPREF9154_2519 | Hypothetical protein. | Ribosomal protein L11 methyltransferase-like protein; Belongs to the methyltransferase superfamily. | 0.430 |
| AFN45792.1 | cgtA | HMPREF9154_2081 | HMPREF9154_1823 | Hypothetical protein. | Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.571 |
| AFN45792.1 | rplA | HMPREF9154_2081 | HMPREF9154_2310 | Hypothetical protein. | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.980 |
| AFN45792.1 | rpoB | HMPREF9154_2081 | HMPREF9154_2293 | Hypothetical protein. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.870 |
| AFN46079.1 | AFN45792.1 | HMPREF9154_2555 | HMPREF9154_2081 | Hypothetical protein. | Hypothetical protein. | 0.642 |
| AFN46079.1 | AFN46517.1 | HMPREF9154_2555 | HMPREF9154_2519 | Hypothetical protein. | Ribosomal protein L11 methyltransferase-like protein; Belongs to the methyltransferase superfamily. | 0.541 |
| AFN46517.1 | AFN45298.1 | HMPREF9154_2519 | HMPREF9154_2520 | Ribosomal protein L11 methyltransferase-like protein; Belongs to the methyltransferase superfamily. | Serine protease do-like HtrA family protein. | 0.529 |
| AFN46517.1 | AFN45792.1 | HMPREF9154_2519 | HMPREF9154_2081 | Ribosomal protein L11 methyltransferase-like protein; Belongs to the methyltransferase superfamily. | Hypothetical protein. | 0.430 |
| AFN46517.1 | AFN46079.1 | HMPREF9154_2519 | HMPREF9154_2555 | Ribosomal protein L11 methyltransferase-like protein; Belongs to the methyltransferase superfamily. | Hypothetical protein. | 0.541 |
| AFN46517.1 | AFN46958.1 | HMPREF9154_2519 | HMPREF9154_2518 | Ribosomal protein L11 methyltransferase-like protein; Belongs to the methyltransferase superfamily. | Acetyltransferase, GNAT family. | 0.545 |
| AFN46517.1 | cgtA | HMPREF9154_2519 | HMPREF9154_1823 | Ribosomal protein L11 methyltransferase-like protein; Belongs to the methyltransferase superfamily. | Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.558 |
| AFN46517.1 | rplA | HMPREF9154_2519 | HMPREF9154_2310 | Ribosomal protein L11 methyltransferase-like protein; Belongs to the methyltransferase superfamily. | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.445 |
| AFN46517.1 | rpoB | HMPREF9154_2519 | HMPREF9154_2293 | Ribosomal protein L11 methyltransferase-like protein; Belongs to the methyltransferase superfamily. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.438 |
| AFN46958.1 | AFN46517.1 | HMPREF9154_2518 | HMPREF9154_2519 | Acetyltransferase, GNAT family. | Ribosomal protein L11 methyltransferase-like protein; Belongs to the methyltransferase superfamily. | 0.545 |
| cgtA | AFN45792.1 | HMPREF9154_1823 | HMPREF9154_2081 | Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | Hypothetical protein. | 0.571 |
| cgtA | AFN46517.1 | HMPREF9154_1823 | HMPREF9154_2519 | Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | Ribosomal protein L11 methyltransferase-like protein; Belongs to the methyltransferase superfamily. | 0.558 |
| cgtA | rplA | HMPREF9154_1823 | HMPREF9154_2310 | Obg family GTPase CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.638 |
| rplA | AFN45792.1 | HMPREF9154_2310 | HMPREF9154_2081 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Hypothetical protein. | 0.980 |
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