AFN45873.1 protein (Pseudopropionibacterium propionicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AFN45873.1

ABC transporter, ATP-binding protein. (214 aa)

Predicted Functional Partners:

AFN45104.1

0.881

AFN46407.1

0.553

AFN45438.1

0.519

AFN47246.1

0.502

serS

0.482

cysS

0.454

rplN

0.441

AFN47222.1

0.426

rplE

0.416

Your Current Organism:

Pseudopropionibacterium propionicum

NCBI taxonomy Id: 767029
Other names: P. propionicum F0230a, Propionibacterium propionicum F0230a, Pseudopropionibacterium propionicum F0230a

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFN45104.1	AFN45873.1	HMPREF9154_2881	HMPREF9154_2880	Efflux ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.881
AFN45104.1	AFN46407.1	HMPREF9154_2881	HMPREF9154_2879	Efflux ABC transporter, permease protein.	Putative ferrichrome ABC transporter, ATP-binding protein FhuC.	0.427
AFN45104.1	AFN47222.1	HMPREF9154_2881	HMPREF9154_2878	Efflux ABC transporter, permease protein.	Iron chelate uptake ABC transporter, FeCT family, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.424
AFN45438.1	AFN45873.1	HMPREF9154_1136	HMPREF9154_2880	ABC transporter, ATP-binding protein.	ABC transporter, ATP-binding protein.	0.519
AFN45873.1	AFN45104.1	HMPREF9154_2880	HMPREF9154_2881	ABC transporter, ATP-binding protein.	Efflux ABC transporter, permease protein.	0.881
AFN45873.1	AFN45438.1	HMPREF9154_2880	HMPREF9154_1136	ABC transporter, ATP-binding protein.	ABC transporter, ATP-binding protein.	0.519
AFN45873.1	AFN46407.1	HMPREF9154_2880	HMPREF9154_2879	ABC transporter, ATP-binding protein.	Putative ferrichrome ABC transporter, ATP-binding protein FhuC.	0.553
AFN45873.1	AFN47222.1	HMPREF9154_2880	HMPREF9154_2878	ABC transporter, ATP-binding protein.	Iron chelate uptake ABC transporter, FeCT family, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.426
AFN45873.1	AFN47246.1	HMPREF9154_2880	HMPREF9154_1840	ABC transporter, ATP-binding protein.	ATPase, AAA family; Belongs to the AAA ATPase family.	0.502
AFN45873.1	cysS	HMPREF9154_2880	HMPREF9154_0701	ABC transporter, ATP-binding protein.	cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.454
AFN45873.1	rplE	HMPREF9154_2880	HMPREF9154_2245	ABC transporter, ATP-binding protein.	50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	0.416
AFN45873.1	rplN	HMPREF9154_2880	HMPREF9154_2247	ABC transporter, ATP-binding protein.	Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.441
AFN45873.1	serS	HMPREF9154_2880	HMPREF9154_0337	ABC transporter, ATP-binding protein.	serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).	0.482
AFN46407.1	AFN45104.1	HMPREF9154_2879	HMPREF9154_2881	Putative ferrichrome ABC transporter, ATP-binding protein FhuC.	Efflux ABC transporter, permease protein.	0.427
AFN46407.1	AFN45873.1	HMPREF9154_2879	HMPREF9154_2880	Putative ferrichrome ABC transporter, ATP-binding protein FhuC.	ABC transporter, ATP-binding protein.	0.553
AFN46407.1	AFN47222.1	HMPREF9154_2879	HMPREF9154_2878	Putative ferrichrome ABC transporter, ATP-binding protein FhuC.	Iron chelate uptake ABC transporter, FeCT family, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.943
AFN47222.1	AFN45104.1	HMPREF9154_2878	HMPREF9154_2881	Iron chelate uptake ABC transporter, FeCT family, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Efflux ABC transporter, permease protein.	0.424
AFN47222.1	AFN45873.1	HMPREF9154_2878	HMPREF9154_2880	Iron chelate uptake ABC transporter, FeCT family, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	ABC transporter, ATP-binding protein.	0.426
AFN47222.1	AFN46407.1	HMPREF9154_2878	HMPREF9154_2879	Iron chelate uptake ABC transporter, FeCT family, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Putative ferrichrome ABC transporter, ATP-binding protein FhuC.	0.943
AFN47246.1	AFN45873.1	HMPREF9154_1840	HMPREF9154_2880	ATPase, AAA family; Belongs to the AAA ATPase family.	ABC transporter, ATP-binding protein.	0.502