AFN45620.1 protein (Pseudopropionibacterium propionicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AFN45620.1

Type I restriction modification DNA specificity domain protein. (409 aa)

Predicted Functional Partners:

hsdM

0.999

AFN46512.1

0.991

AFN45605.1

0.912

AFN45701.1

0.830

AFN47163.1

0.814

AFN47665.1

0.630

polA

0.497

atpF

0.472

AFN46786.1

0.417

Your Current Organism:

Pseudopropionibacterium propionicum

NCBI taxonomy Id: 767029
Other names: P. propionicum F0230a, Propionibacterium propionicum F0230a, Pseudopropionibacterium propionicum F0230a

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFN45605.1	AFN45620.1	HMPREF9154_2901	HMPREF9154_2902	Toxin-antitoxin system, toxin component, Fic family.	Type I restriction modification DNA specificity domain protein.	0.912
AFN45605.1	AFN46512.1	HMPREF9154_2901	HMPREF9154_2904	Toxin-antitoxin system, toxin component, Fic family.	Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.910
AFN45605.1	AFN46786.1	HMPREF9154_2901	HMPREF9154_2899	Toxin-antitoxin system, toxin component, Fic family.	Divergent AAA domain protein.	0.410
AFN45605.1	AFN47163.1	HMPREF9154_2901	HMPREF9154_2903	Toxin-antitoxin system, toxin component, Fic family.	Restriction endonuclease.	0.780
AFN45605.1	hsdM	HMPREF9154_2901	HMPREF9154_2900	Toxin-antitoxin system, toxin component, Fic family.	Type I restriction-modification system, M subunit.	0.911
AFN45620.1	AFN45605.1	HMPREF9154_2902	HMPREF9154_2901	Type I restriction modification DNA specificity domain protein.	Toxin-antitoxin system, toxin component, Fic family.	0.912
AFN45620.1	AFN45701.1	HMPREF9154_2902	HMPREF9154_0454	Type I restriction modification DNA specificity domain protein.	Hypothetical protein.	0.830
AFN45620.1	AFN46512.1	HMPREF9154_2902	HMPREF9154_2904	Type I restriction modification DNA specificity domain protein.	Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.991
AFN45620.1	AFN46786.1	HMPREF9154_2902	HMPREF9154_2899	Type I restriction modification DNA specificity domain protein.	Divergent AAA domain protein.	0.417
AFN45620.1	AFN47163.1	HMPREF9154_2902	HMPREF9154_2903	Type I restriction modification DNA specificity domain protein.	Restriction endonuclease.	0.814
AFN45620.1	AFN47665.1	HMPREF9154_2902	HMPREF9154_2591	Type I restriction modification DNA specificity domain protein.	Toxin-antitoxin system, toxin component, Fic family.	0.630
AFN45620.1	atpF	HMPREF9154_2902	HMPREF9154_1417	Type I restriction modification DNA specificity domain protein.	ATP synthase F0, B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.	0.472
AFN45620.1	hsdM	HMPREF9154_2902	HMPREF9154_2900	Type I restriction modification DNA specificity domain protein.	Type I restriction-modification system, M subunit.	0.999
AFN45620.1	polA	HMPREF9154_2902	HMPREF9154_1906	Type I restriction modification DNA specificity domain protein.	DNA polymerase I, thermostable; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.497
AFN45701.1	AFN45620.1	HMPREF9154_0454	HMPREF9154_2902	Hypothetical protein.	Type I restriction modification DNA specificity domain protein.	0.830
AFN45701.1	AFN46512.1	HMPREF9154_0454	HMPREF9154_2904	Hypothetical protein.	Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.695
AFN45701.1	AFN47163.1	HMPREF9154_0454	HMPREF9154_2903	Hypothetical protein.	Restriction endonuclease.	0.473
AFN45701.1	hsdM	HMPREF9154_0454	HMPREF9154_2900	Hypothetical protein.	Type I restriction-modification system, M subunit.	0.734
AFN46512.1	AFN45605.1	HMPREF9154_2904	HMPREF9154_2901	Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Toxin-antitoxin system, toxin component, Fic family.	0.910
AFN46512.1	AFN45620.1	HMPREF9154_2904	HMPREF9154_2902	Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Type I restriction modification DNA specificity domain protein.	0.991