AFN46681.1 protein (Pseudopropionibacterium propionicum)

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second shell of interactors

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Edges represent protein-protein associations

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

AFN46681.1

Putative tRNA adenosine deaminase-associated protein. (195 aa)

Predicted Functional Partners:

tadA

0.854

AFN47125.1

0.763

AFN44914.1

0.759

AFN44930.1

0.759

AFN45277.1

0.754

AFN46718.1

0.749

AFN46231.1

0.742

AFN45644.1

0.724

AFN46864.1

0.720

AFN47416.1

0.719

Your Current Organism:

Pseudopropionibacterium propionicum

NCBI taxonomy Id: 767029
Other names: P. propionicum F0230a, Propionibacterium propionicum F0230a, Pseudopropionibacterium propionicum F0230a

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFN44914.1	AFN44930.1	HMPREF9154_0957	HMPREF9154_1914	Hypothetical protein.	DivIVA domain protein.	0.506
AFN44914.1	AFN45277.1	HMPREF9154_0957	HMPREF9154_1535	Hypothetical protein.	Hypothetical protein.	0.762
AFN44914.1	AFN45644.1	HMPREF9154_0957	HMPREF9154_1248	Hypothetical protein.	Hypothetical protein.	0.651
AFN44914.1	AFN46231.1	HMPREF9154_0957	HMPREF9154_0379	Hypothetical protein.	CpaE-like protein.	0.496
AFN44914.1	AFN46681.1	HMPREF9154_0957	HMPREF9154_2942	Hypothetical protein.	Putative tRNA adenosine deaminase-associated protein.	0.759
AFN44914.1	AFN46718.1	HMPREF9154_0957	HMPREF9154_2414	Hypothetical protein.	Putative membrane protein.	0.717
AFN44914.1	AFN46864.1	HMPREF9154_0957	HMPREF9154_0858	Hypothetical protein.	Hypothetical protein.	0.639
AFN44914.1	AFN47125.1	HMPREF9154_0957	HMPREF9154_0744	Hypothetical protein.	Hypothetical protein.	0.774
AFN44914.1	AFN47416.1	HMPREF9154_0957	HMPREF9154_1145	Hypothetical protein.	Hypothetical protein.	0.771
AFN44930.1	AFN44914.1	HMPREF9154_1914	HMPREF9154_0957	DivIVA domain protein.	Hypothetical protein.	0.506
AFN44930.1	AFN45277.1	HMPREF9154_1914	HMPREF9154_1535	DivIVA domain protein.	Hypothetical protein.	0.662
AFN44930.1	AFN46231.1	HMPREF9154_1914	HMPREF9154_0379	DivIVA domain protein.	CpaE-like protein.	0.604
AFN44930.1	AFN46681.1	HMPREF9154_1914	HMPREF9154_2942	DivIVA domain protein.	Putative tRNA adenosine deaminase-associated protein.	0.759
AFN44930.1	AFN46718.1	HMPREF9154_1914	HMPREF9154_2414	DivIVA domain protein.	Putative membrane protein.	0.732
AFN44930.1	AFN46864.1	HMPREF9154_1914	HMPREF9154_0858	DivIVA domain protein.	Hypothetical protein.	0.717
AFN44930.1	AFN47125.1	HMPREF9154_1914	HMPREF9154_0744	DivIVA domain protein.	Hypothetical protein.	0.661
AFN45277.1	AFN44914.1	HMPREF9154_1535	HMPREF9154_0957	Hypothetical protein.	Hypothetical protein.	0.762
AFN45277.1	AFN44930.1	HMPREF9154_1535	HMPREF9154_1914	Hypothetical protein.	DivIVA domain protein.	0.662
AFN45277.1	AFN45644.1	HMPREF9154_1535	HMPREF9154_1248	Hypothetical protein.	Hypothetical protein.	0.447
AFN45277.1	AFN46231.1	HMPREF9154_1535	HMPREF9154_0379	Hypothetical protein.	CpaE-like protein.	0.638

page 1 of 5

Network Stats

number of nodes:

11

number of edges:

33

average node degree:

6

avg. local clustering coefficient:

0.888

expected number of edges:

11

PPI enrichment p-value:

1.06e-07

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0032511

Late endosome to vacuole transport via multivesicular body sorting pathway

3 of 13

2.54

1.61

0.0011

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:30572

Mixed, incl. Late endosome to vacuole transport via multivesicular body sorting pathway, and HCN channels

9 of 30

2.66

9.23

1.61e-19

CL:30574

Mixed, incl. Late endosome to vacuole transport via multivesicular body sorting pathway, and Polypeptide N-acetylgalactosaminyltransferase activity

8 of 18

2.83

9.07

2.19e-18

CL:30577

Mixed, incl. Synaptonemal complex protein 2-like, and Rab-GTPase-TBC domain

5 of 6

3.1

5.88

1.49e-11

CL:30595

Vps55/LEPROT, and Uncharacterised protein family UPF0220

3 of 5

2.96

2.81

7.42e-06

CL:19564

Dystrophin-associated glycoprotein complex, and EF-hand

2 of 14

2.33

0.87

0.0251

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0016012

Sarcoglycan complex

2 of 5

2.78

1.04

0.0129

GOCC:0005927

Muscle tendon junction

2 of 6

2.7

1.04

0.0129

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF05255

Uncharacterised protein family (UPF0220)

2 of 2

3.18

1.3

0.0046

PF04790

Sarcoglycan complex subunit protein

2 of 5

2.78

1.15

0.0081

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR007919

Uncharacterised protein family UPF0220

2 of 2

3.18

1.02

0.0145

IPR039972

Sarcoglycan gamma/delta/zeta

2 of 4

2.88

0.97

0.0181

IPR006875

Sarcoglycan complex subunit protein

2 of 5

2.78

0.96

0.0181

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