AFN47383.1 protein (Pseudopropionibacterium propionicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AFN47383.1

R3H domain protein. (156 aa)

Predicted Functional Partners:

AFN46380.1

0.978

AFN47465.1

0.935

rnpA

0.922

AFN46303.1

0.917

gidB

0.905

rpmH

0.791

AFN47028.1

0.745

lgt

0.660

trpA

0.650

rplP

0.650

Your Current Organism:

Pseudopropionibacterium propionicum

NCBI taxonomy Id: 767029
Other names: P. propionicum F0230a, Propionibacterium propionicum F0230a, Pseudopropionibacterium propionicum F0230a

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFN46303.1	AFN46380.1	HMPREF9154_3191	HMPREF9154_3190	YidD family protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.	60Kd inner membrane protein.	0.972
AFN46303.1	AFN47383.1	HMPREF9154_3191	HMPREF9154_3189	YidD family protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.	R3H domain protein.	0.917
AFN46303.1	gidB	HMPREF9154_3191	HMPREF9154_3188	YidD family protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.	16S rRNA (guanine(527)-N(7))-methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.	0.684
AFN46303.1	rnpA	HMPREF9154_3191	HMPREF9154_3192	YidD family protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.	Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.	0.989
AFN46303.1	rpmH	HMPREF9154_3191	HMPREF9154_3193	YidD family protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.	Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.898
AFN46380.1	AFN46303.1	HMPREF9154_3190	HMPREF9154_3191	60Kd inner membrane protein.	YidD family protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.	0.972
AFN46380.1	AFN47383.1	HMPREF9154_3190	HMPREF9154_3189	60Kd inner membrane protein.	R3H domain protein.	0.978
AFN46380.1	gidB	HMPREF9154_3190	HMPREF9154_3188	60Kd inner membrane protein.	16S rRNA (guanine(527)-N(7))-methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.	0.847
AFN46380.1	lgt	HMPREF9154_3190	HMPREF9154_0103	60Kd inner membrane protein.	Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.	0.736
AFN46380.1	rnpA	HMPREF9154_3190	HMPREF9154_3192	60Kd inner membrane protein.	Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.	0.983
AFN46380.1	rplP	HMPREF9154_3190	HMPREF9154_2269	60Kd inner membrane protein.	Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.823
AFN46380.1	rpmH	HMPREF9154_3190	HMPREF9154_3193	60Kd inner membrane protein.	Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.966
AFN46380.1	trpA	HMPREF9154_3190	HMPREF9154_1680	60Kd inner membrane protein.	Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.	0.688
AFN47028.1	AFN47383.1	HMPREF9154_1827	HMPREF9154_3189	Ribonuclease E/G family protein.	R3H domain protein.	0.745
AFN47028.1	AFN47465.1	HMPREF9154_1827	HMPREF9154_1318	Ribonuclease E/G family protein.	KH domain protein; Belongs to the UPF0109 family.	0.699
AFN47383.1	AFN46303.1	HMPREF9154_3189	HMPREF9154_3191	R3H domain protein.	YidD family protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.	0.917
AFN47383.1	AFN46380.1	HMPREF9154_3189	HMPREF9154_3190	R3H domain protein.	60Kd inner membrane protein.	0.978
AFN47383.1	AFN47028.1	HMPREF9154_3189	HMPREF9154_1827	R3H domain protein.	Ribonuclease E/G family protein.	0.745
AFN47383.1	AFN47465.1	HMPREF9154_3189	HMPREF9154_1318	R3H domain protein.	KH domain protein; Belongs to the UPF0109 family.	0.935
AFN47383.1	gidB	HMPREF9154_3189	HMPREF9154_3188	R3H domain protein.	16S rRNA (guanine(527)-N(7))-methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.	0.905