Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEA20830.1Identified by match to protein family HMM PF08011. (512 aa)    
Predicted Functional Partners:
AEA20059.1
Identified by match to protein family HMM TIGR01784.
  
     0.659
AEA21122.1
Divergent AAA domain protein; Identified by match to protein family HMM PF04326.
  
     0.637
AEA21632.1
Identified by match to protein family HMM PF08011.
 
    
0.510
AEA20515.1
Hypothetical protein.
  
 
 0.451
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
 
 0.451
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.424
AEA20648.1
Hypothetical protein; Overlaps another CDS with the same product name.
  
     0.408
AEA20734.1
Hypothetical protein.
  
     0.400
Your Current Organism:
Prevotella denticola
NCBI taxonomy Id: 767031
Other names: P. denticola F0289, Prevotella denticola F0289, Prevotella denticola str. F0289, Prevotella denticola strain F0289
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