Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEA21156.1Identified by match to protein family HMM PF01575. (154 aa)    
Predicted Functional Partners:
AEA20807.1
acyl-CoA dehydrogenase, C-terminal domain protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.
  
 0.709
AEA20958.1
Hypothetical protein.
  
 
 0.633
AEA20547.1
Putative FeS assembly SUF system protein; Identified by match to protein family HMM PF01883.
  
  
 0.545
AEA21787.1
Hypothetical protein.
  
    0.520
AEA21190.1
biotin--[acetyl-CoA-carboxylase] ligase; Identified by match to protein family HMM PF03099; match to protein family HMM TIGR00121.
  
  
 0.461
nifJ
Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02175; match to protein family HMM TIGR02176.
  
  
 0.445
AEA21885.1
Peptidase Do; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM PF03510; match to protein family HMM TIGR02037.
    
 0.438
Your Current Organism:
Prevotella denticola
NCBI taxonomy Id: 767031
Other names: P. denticola F0289, Prevotella denticola F0289, Prevotella denticola str. F0289, Prevotella denticola strain F0289
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