STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlpAPutative rare lipoprotein A double-psi beta-barrel protein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (256 aa)    
Predicted Functional Partners:
AEA21949.1
Identified by match to protein family HMM PF00691; match to protein family HMM PF07676.
 
 
 0.675
gdh
Glutamate dehydrogenase, NAD-specific; Identified by match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
       0.578
nifJ
Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02175; match to protein family HMM TIGR02176.
   
   0.567
AEA21642.1
Peptidase, M23 family; Identified by match to protein family HMM PF01551.
  
 
 0.499
AEA22130.1
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
 
   0.499
AEA20954.1
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
 
   0.487
AEA21630.1
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
 
 0.483
AEA20865.1
Peptidase, M23 family; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551.
  
 
 0.445
AEA20341.1
Pyruvate phosphate dikinase, PEP/pyruvate binding domain protein; Identified by match to protein family HMM PF01326.
       0.445
AEA20036.1
Transglycosylase; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912.
 
   
 0.441
Your Current Organism:
Prevotella denticola
NCBI taxonomy Id: 767031
Other names: P. denticola F0289, Prevotella denticola F0289, Prevotella denticola str. F0289, Prevotella denticola strain F0289
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.