Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EGL39123.1Identified by match to protein family HMM PF06182. (257 aa)    
Predicted Functional Partners:
EGL38799.1
Identified by match to protein family HMM PF06182.
 
  
 0.957
EGL39079.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 0.956
EGL38829.1
Identified by match to protein family HMM PF06182.
 
  
 0.800
EGL38519.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 0.795
EGL38956.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
     0.739
EGL35732.1
Identified by match to protein family HMM PF00082; match to protein family HMM PF02225; match to protein family HMM PF05738; match to protein family HMM PF06280; Belongs to the peptidase S8 family.
  
     0.467
EGL35191.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
  
     0.443
EGL39080.1
Hypothetical protein.
  
     0.439
EGL39127.1
Peptidase C1-like family; Identified by match to protein family HMM PF03051; Belongs to the peptidase C1 family.
       0.436
ysxC
Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.
       0.419
Your Current Organism:
Parvimonas sp. F0139
NCBI taxonomy Id: 767100
Other names: P. sp. oral taxon 110 str. F0139, Parvimonas sp. oral taxon 110 str. F0139, Parvimonas sp. oral taxon 110 strain F0139
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