Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rtcBRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RtcB family. (473 aa)    
Predicted Functional Partners:
KRV47693.1
Archease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.970
KRV49015.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.679
KRV48438.1
RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.630
KRV47425.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.630
KRV47091.1
DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.
   
  0.630
KRV49399.1
DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.630
KRV51257.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.579
KRV47691.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.570
KRV48914.1
Erythromycin esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.448
KRV49639.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.405
Your Current Organism:
Streptomyces vitaminophilus
NCBI taxonomy Id: 76728
Other names: ATCC 31673, Actinosporangium vitaminiphilum, Actinosporangium vitaminophilum, DSM 41686, IFO 14294, JCM 6054, NBRC 14294, NRRL B-16933, S. vitaminophilus, Streptomyces vitaminiphilus, Streptomyces vitaminophileus, strain SF 2080
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