STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAXylose isomerase; Catalyzes the interconversion of D-xylose to D-xylulose; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the xylose isomerase family. (390 aa)    
Predicted Functional Partners:
xylB
Xylulose kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
KRV46748.1
Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FGGY kinase family.
 
 
 0.983
KRV46956.1
ROK family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.950
KRV50566.1
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.896
KRV49551.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.896
KRV51287.1
Glucokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.895
KRV51429.1
FAD-linked oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.895
KRV51159.1
ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.895
KRV50420.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.895
KRV50098.1
Glucokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.895
Your Current Organism:
Streptomyces vitaminophilus
NCBI taxonomy Id: 76728
Other names: ATCC 31673, Actinosporangium vitaminiphilum, Actinosporangium vitaminophilum, DSM 41686, IFO 14294, JCM 6054, NBRC 14294, NRRL B-16933, S. vitaminophilus, Streptomyces vitaminiphilus, Streptomyces vitaminophileus, strain SF 2080
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