Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KRV50172.1Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)    
Predicted Functional Partners:
KRV50091.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.873
AQ490_16865
CdaR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.818
KRV50092.1
Protein tyrosine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.758
KRV47617.1
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.629
KRV48200.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.593
KRV50876.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.583
KRV47519.1
Sugar hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.561
KRV48632.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.504
KRV50173.1
Alpha-(1-2)-phosphatidylinositol mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.474
KRV47914.1
Flavoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.472
Your Current Organism:
Streptomyces vitaminophilus
NCBI taxonomy Id: 76728
Other names: ATCC 31673, Actinosporangium vitaminiphilum, Actinosporangium vitaminophilum, DSM 41686, IFO 14294, JCM 6054, NBRC 14294, NRRL B-16933, S. vitaminophilus, Streptomyces vitaminiphilus, Streptomyces vitaminophileus, strain SF 2080
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