Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KRV50118.1Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (490 aa)    
Predicted Functional Partners:
KRV48040.1
Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.857
KRV50119.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.811
KRV48063.1
Squalene synthase HpnC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.804
KRV46728.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.628
KRV46506.1
Fatty acid desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.580
AQ490_21390
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.539
KRV49758.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.508
AQ490_17045
HEPN_SAV_6107 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.499
KRV50122.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.499
KRV50593.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.498
Your Current Organism:
Streptomyces vitaminophilus
NCBI taxonomy Id: 76728
Other names: ATCC 31673, Actinosporangium vitaminiphilum, Actinosporangium vitaminophilum, DSM 41686, IFO 14294, JCM 6054, NBRC 14294, NRRL B-16933, S. vitaminophilus, Streptomyces vitaminiphilus, Streptomyces vitaminophileus, strain SF 2080
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