STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRV48975.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (682 aa)    
Predicted Functional Partners:
KRV48974.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.860
KRV48973.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.831
KRV50200.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.830
KRV50733.1
CbxX/CfqX; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.830
KRV49688.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.830
KRV48219.1
Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.830
KRV51151.1
Protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.611
KRV50158.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.608
tyrS
tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.
    
   0.501
KRV51334.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.464
Your Current Organism:
Streptomyces vitaminophilus
NCBI taxonomy Id: 76728
Other names: ATCC 31673, Actinosporangium vitaminiphilum, Actinosporangium vitaminophilum, DSM 41686, IFO 14294, JCM 6054, NBRC 14294, NRRL B-16933, S. vitaminophilus, Streptomyces vitaminiphilus, Streptomyces vitaminophileus, strain SF 2080
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