Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
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[Homology]
Score
KRV48119.1Plasmid stabilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)    
Predicted Functional Partners:
KRV48116.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.771
KRV48118.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.734
KRV50374.1
Shikimate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the shikimate dehydrogenase family.
   
 
  0.533
aroQ
3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
     
  0.530
KRV50419.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.506
KRV47607.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.493
KRV49758.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.485
KRV48734.1
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.485
KRV48212.1
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.485
KRV51430.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.471
Your Current Organism:
Streptomyces vitaminophilus
NCBI taxonomy Id: 76728
Other names: ATCC 31673, Actinosporangium vitaminiphilum, Actinosporangium vitaminophilum, DSM 41686, IFO 14294, JCM 6054, NBRC 14294, NRRL B-16933, S. vitaminophilus, Streptomyces vitaminiphilus, Streptomyces vitaminophileus, strain SF 2080
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