STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV05728.1Pfam:pfam00005 ABC transporter. (583 aa)    
Predicted Functional Partners:
ALV05727.1
Pfam:pfam00005 ABC transporter.
 
  
 
0.983
ALV05480.1
Toluene ABC transporter ATP-binding protein; Pfam:pfam00005 ABC transporter.
     
0.723
ALV04724.1
Phosphate ABC transporter ATP-binding protein; Pfam:pfam00005 ABC transporter.
 
     
0.696
ALV05459.1
Pfam:pfam00005 ABC transporter; Belongs to the ABC transporter superfamily.
 
     
0.658
ALV06090.1
FAD-binding protein; Pfam:pfam04954 Siderophore-interacting protein.
  
 
 0.485
ALV08500.1
D,D-heptose 1,7-bisphosphate phosphatase; Pfam:pfam00483 Nucleotidyl transferase.
   
 
 0.455
ALV07063.1
AAA ATPase, central domain protein; Pfam:pfam00004 ATPase family associated with various cellular activities (AAA).
   
 0.443
ALV04864.1
ATPase; Pfam:pfam00004 ATPase family associated with various cellular activities (AAA).
   
 0.443
ALV05156.1
Hypothetical protein; Pfam:pfam00266 Aminotransferase class-V.
 
 
 0.440
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.432
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.