STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV05729.1Hypothetical protein; Pfam:pfam03640 Secreted repeat of unknown function. (140 aa)    
Predicted Functional Partners:
ALV05730.1
Pfam:pfam01553 Acyltransferase.
       0.510
ALV05731.1
Pfam:pfam01148 Cytidylyltransferase family.
       0.510
ruvC
Holliday junction resolvase; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
       0.486
ALV05841.1
Hypothetical protein; Pfam:pfam10282 Lactonase, 7-bladed beta-propeller.
 
     0.425
ALV05727.1
Pfam:pfam00005 ABC transporter.
       0.423
ALV05728.1
Pfam:pfam00005 ABC transporter.
       0.423
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.