Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ALV04711.1 | ALV06047.1 | RD2015_206 | RD2015_1562 | Heat shock protein 70. | Hypothetical protein; Pfam:pfam13650 Aspartyl protease. | 0.656 |
ALV04711.1 | ALV07828.1 | RD2015_206 | RD2015_3371 | Heat shock protein 70. | Ankyrin; Pfam:pfam12796 Ankyrin repeats (3 copies). | 0.466 |
ALV04711.1 | htpG | RD2015_206 | RD2015_928 | Heat shock protein 70. | Chaperone protein HtpG; Molecular chaperone. Has ATPase activity. | 0.970 |
ALV04711.1 | rpoA | RD2015_206 | RD2015_581 | Heat shock protein 70. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.463 |
ALV06047.1 | ALV04711.1 | RD2015_1562 | RD2015_206 | Hypothetical protein; Pfam:pfam13650 Aspartyl protease. | Heat shock protein 70. | 0.656 |
ALV06047.1 | ALV07458.1 | RD2015_1562 | RD2015_2996 | Hypothetical protein; Pfam:pfam13650 Aspartyl protease. | Pfam:pfam00361 NADH-Ubiquinone/plastoquinone (complex I), various chains. | 0.618 |
ALV06047.1 | ALV07828.1 | RD2015_1562 | RD2015_3371 | Hypothetical protein; Pfam:pfam13650 Aspartyl protease. | Ankyrin; Pfam:pfam12796 Ankyrin repeats (3 copies). | 0.636 |
ALV06047.1 | alaS | RD2015_1562 | RD2015_1691 | Hypothetical protein; Pfam:pfam13650 Aspartyl protease. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.785 |
ALV06047.1 | dnaK | RD2015_1562 | RD2015_1569 | Hypothetical protein; Pfam:pfam13650 Aspartyl protease. | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.656 |
ALV06047.1 | hscA | RD2015_1562 | RD2015_2013 | Hypothetical protein; Pfam:pfam13650 Aspartyl protease. | Molecular chaperone HscA; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. | 0.656 |
ALV06047.1 | htpG | RD2015_1562 | RD2015_928 | Hypothetical protein; Pfam:pfam13650 Aspartyl protease. | Chaperone protein HtpG; Molecular chaperone. Has ATPase activity. | 0.793 |
ALV06047.1 | rpoA | RD2015_1562 | RD2015_581 | Hypothetical protein; Pfam:pfam13650 Aspartyl protease. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.703 |
ALV06047.1 | rpoB | RD2015_1562 | RD2015_545 | Hypothetical protein; Pfam:pfam13650 Aspartyl protease. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.670 |
ALV06047.1 | rpoZ | RD2015_1562 | RD2015_3714 | Hypothetical protein; Pfam:pfam13650 Aspartyl protease. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.692 |
ALV07458.1 | ALV06047.1 | RD2015_2996 | RD2015_1562 | Pfam:pfam00361 NADH-Ubiquinone/plastoquinone (complex I), various chains. | Hypothetical protein; Pfam:pfam13650 Aspartyl protease. | 0.618 |
ALV07458.1 | ALV07828.1 | RD2015_2996 | RD2015_3371 | Pfam:pfam00361 NADH-Ubiquinone/plastoquinone (complex I), various chains. | Ankyrin; Pfam:pfam12796 Ankyrin repeats (3 copies). | 0.549 |
ALV07458.1 | rpoB | RD2015_2996 | RD2015_545 | Pfam:pfam00361 NADH-Ubiquinone/plastoquinone (complex I), various chains. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.403 |
ALV07828.1 | ALV04711.1 | RD2015_3371 | RD2015_206 | Ankyrin; Pfam:pfam12796 Ankyrin repeats (3 copies). | Heat shock protein 70. | 0.466 |
ALV07828.1 | ALV06047.1 | RD2015_3371 | RD2015_1562 | Ankyrin; Pfam:pfam12796 Ankyrin repeats (3 copies). | Hypothetical protein; Pfam:pfam13650 Aspartyl protease. | 0.636 |
ALV07828.1 | ALV07458.1 | RD2015_3371 | RD2015_2996 | Ankyrin; Pfam:pfam12796 Ankyrin repeats (3 copies). | Pfam:pfam00361 NADH-Ubiquinone/plastoquinone (complex I), various chains. | 0.549 |
page 1 of 3