STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV06083.1SapC; Pfam:pfam07277 SapC. (246 aa)    
Predicted Functional Partners:
ALV06082.1
CBS domain protein; Pfam:pfam01595 Domain of unknown function DUF21.
       0.790
ALV07039.1
Pfam:pfam00593 TonB dependent receptor.
 
     0.702
ALV08918.1
Pfam:pfam04820 Tryptophan halogenase.
 
     0.698
ALV07136.1
Hypothetical protein; Pfam:pfam00593 TonB dependent receptor.
 
     0.687
ALV07280.1
TonB-dependent outer membrane receptor; Pfam:pfam00593 TonB dependent receptor.
 
     0.686
ALV07281.1
Cupin; Pfam:pfam13621 Cupin-like domain.
 
     0.678
ALV05624.1
Pfam:pfam00593 TonB dependent receptor.
 
     0.656
ALV05036.1
Pfam:pfam00593 TonB dependent receptor.
 
     0.611
ALV08129.1
Pfam:pfam00593 TonB dependent receptor.
 
     0.601
ALV09157.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
  
     0.584
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.