STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV04683.1Putative NADH-flavin reductase; Pfam:pfam13460 NADH(P)-binding. (213 aa)    
Predicted Functional Partners:
ALV08027.1
Pfam:pfam06041 Bacterial protein of unknown function (DUF924).
  
    0.827
ALV06243.1
General stress protein; Pfam:pfam01243 Pyridoxamine 5'-phosphate oxidase.
  
    0.766
ALV04682.1
LysR family transcriptional regulator; Pfam:pfam03466 LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family.
 
     0.633
ALV06048.1
Pfam:pfam06983 3-demethylubiquinone-9 3-methyltransferase.
   
    0.562
ALV06144.1
Pfam:pfam05532 CsbD-like; Belongs to the UPF0337 (CsbD) family.
   
    0.560
ALV06495.1
General stress protein CsbD; Pfam:pfam05532 CsbD-like; Belongs to the UPF0337 (CsbD) family.
   
    0.560
ALV06982.1
Hypothetical protein.
  
  
 0.532
ALV07524.1
Aldehyde reductase; Pfam:pfam00465 Iron-containing alcohol dehydrogenase.
  
  
 0.532
ALV08108.1
Hypothetical protein.
  
  
 0.532
ALV04681.1
CAAX prenyl protease-related protein; Pfam:pfam02517 CAAX protease self-immunity.
       0.531
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.