STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV06286.1Pfam:pfam00529 HlyD family secretion protein. (402 aa)    
Predicted Functional Partners:
ALV06285.1
Type I secretion system ATPase; Pfam:pfam00005 ABC transporter.
 
 0.979
ALV06888.1
ABC-type bacteriocin/lantibiotic exporter; Pfam:pfam00005 ABC transporter.
 
 0.912
ALV06287.1
Pfam:pfam02321 Outer membrane efflux protein.
 
 
 0.840
ALV06889.1
Hypothetical protein; Pfam:pfam02321 Outer membrane efflux protein.
 
 
 0.787
macB
ABC transporter; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.728
ALV06284.1
Putative O-linked N-acetylglucosamine transferase, SPINDLY family; Pfam:pfam13844 Glycosyl transferase family 41.
       0.716
ALV07750.1
Putative ATP-binding cassette sub-family B member 9-like; Pfam:pfam00005 ABC transporter.
 
 0.672
ALV06579.1
Pfam:pfam02321 Outer membrane efflux protein.
 
 
 0.655
ALV07698.1
Type I secretion protein TolC; Pfam:pfam02321 Outer membrane efflux protein.
 
 
 0.645
ALV04831.1
ABC transporter, HlyB/MsbA family; Pfam:pfam00005 ABC transporter.
 
 
 0.628
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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