STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV06296.1Peptidoglycan bridge formation protein FemAB; Pfam:pfam13480 Acetyltransferase (GNAT) domain. (344 aa)    
Predicted Functional Partners:
ALV06295.1
Polysaccharide deactylase family protein, pep-cterm locus subfamily; Pfam:pfam11959 Domain of unknown function (DUF3473).
 
   
 0.954
ALV06297.1
Sugar transferase; Pfam:pfam13692 Glycosyl transferases group 1.
 
     0.949
ALV06298.1
Exosortase; Pfam:pfam09721 Transmembrane exosortase (Exosortase_EpsH).
 
     0.949
ALV06299.1
Sugar transferase; Pfam:pfam00534 Glycosyl transferases group 1.
 
     0.948
ALV06300.1
Asparagine synthetase; Pfam:pfam13537 Glutamine amidotransferase domain.
 
     0.936
ALV06293.1
Hypothetical protein.
 
     0.916
ALV06291.1
Polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; Pfam:pfam02706 Chain length determinant protein.
 
     0.914
ALV06294.1
Putative nucleoside-triphosphatase; Pfam:pfam13401 AAA domain.
 
     0.910
ALV06292.1
Non-specific protein-tyrosine kinase; Pfam:pfam13614 AAA domain.
 
     0.907
ALV06301.1
Pfam:pfam00534 Glycosyl transferases group 1.
 
     0.907
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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