STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV06307.1RND transporter; Pfam:pfam02321 Outer membrane efflux protein. (524 aa)    
Predicted Functional Partners:
ALV06309.1
Multidrug ABC transporter permease; Pfam:pfam00529 HlyD family secretion protein.
 
 
 0.904
ALV06308.1
DSBA oxidoreductase; Pfam:pfam07690 Major Facilitator Superfamily.
 
  
 0.811
ALV08762.1
Multidrug transporter; Pfam:pfam00529 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.780
ALV06967.1
Efflux transporter; Pfam:pfam00529 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.725
ALV08761.1
Acriflavine resistance protein B; Pfam:pfam00873 AcrB/AcrD/AcrF family.
   0.706
macB
ABC transporter; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.696
ALV06966.1
Acriflavine resistance protein B; Pfam:pfam00873 AcrB/AcrD/AcrF family.
   0.684
ALV05306.1
Efflux transporter, RND family, MFP subunit; Pfam:pfam00529 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.673
ALV05307.1
Pfam:pfam00873 AcrB/AcrD/AcrF family.
   0.657
ALV08884.1
Pfam:pfam00529 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.648
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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