STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV06393.1Arabinose efflux permease family protein; Pfam:pfam07690 Major Facilitator Superfamily. (427 aa)    
Predicted Functional Partners:
ALV06392.1
Hypothetical protein.
       0.762
ALV06390.1
Type 11 methyltransferase; Pfam:pfam13649 Methyltransferase domain.
 
 
   0.710
ALV06391.1
Pfam:pfam00106 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.662
ALV06394.1
Hypothetical protein.
       0.658
ALV08694.1
MFS transporter; Pfam:pfam07690 Major Facilitator Superfamily.
  
   
0.566
dapA
4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
     
 0.495
parE
DNA topoisomerase 4 subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.
     
 0.483
ALV06388.1
Pfam:pfam06804 NlpB/DapX lipoprotein.
       0.430
ALV06852.1
Peptide ABC transporter ATP-binding protein; Pfam:pfam00892 EamA-like transporter family.
  
     0.414
ALV06397.1
Lytic transglycosylase catalytic subunit; Pfam:pfam01464 Transglycosylase SLT domain.
       0.403
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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