STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV04699.1Pfam:pfam07728 AAA domain (dynein-related subfamily). (359 aa)    
Predicted Functional Partners:
ALV04698.1
Pfam:pfam13203 Putative metallopeptidase domain.
 
    0.956
RD2015_22
SWIM zinc finger-containing protein.
  
     0.704
ALV04700.1
Hypothetical protein.
       0.639
ALV05034.1
Putative hydrolase.
  
     0.528
ALV07015.1
Hypothetical protein; Pfam:pfam12695 Alpha/beta hydrolase family.
  
     0.457
ALV07017.1
Pfam:pfam12695 Alpha/beta hydrolase family.
  
     0.453
ALV07411.1
Hypothetical protein; Pfam:pfam13302 Acetyltransferase (GNAT) domain.
  
     0.437
ALV07376.1
Pfam:pfam01276 Orn/Lys/Arg decarboxylase, major domain.
    
 
 0.423
ALV08249.1
Hypothetical protein.
  
     0.422
ALV07830.1
Exoglucanase B; Pfam:pfam02011 Glycosyl hydrolase family 48.
  
     0.417
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.