STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV06480.1Pfam:pfam00155 Aminotransferase class I and II. (400 aa)    
Predicted Functional Partners:
ALV08871.1
Pfam:pfam14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal.
  
 
 0.954
ALV06341.1
Chorismate mutase, clade 2; Pfam:pfam00800 Prephenate dehydratase.
    
 0.945
ALV06340.1
Pfam:pfam02153 Prephenate dehydrogenase.
    
 0.925
ALV05578.1
Hypothetical protein; Pfam:pfam00155 Aminotransferase class I and II.
   
 
 0.920
hisC
Pfam:pfam00155 Aminotransferase class I and II; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.920
ALV05181.1
Pfam:pfam00155 Aminotransferase class I and II.
   
 0.912
ALV08892.1
Branched subunit Amino acid: 2-keto-4-methylthiobutyrate aminotransferase; Pfam:pfam01063 Aminotransferase class IV.
     
 0.911
katG
Hydroperoxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
     
 0.910
metK
S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
     
 0.910
ALV06049.1
Histidine kinase.
    
  0.909
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.