STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV06531.1Aldehyde dehydrogenase; Pfam:pfam09537 Domain of unknown function (DUF2383). (153 aa)    
Predicted Functional Partners:
pufL
Photosynthetic reaction center L subunit; Pfam:pfam00124 Photosynthetic reaction centre protein; Belongs to the reaction center PufL/M/PsbA/D family.
   
 
 0.879
pufM
Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
   
 
 0.863
pufC
Photosynthetic reaction center cytochrome c subunit; The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor.
   
 
 0.808
pufA
LH1 alpha subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
   
 
 0.723
pufB
LH1 beta subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
    
 
 0.718
ALV06901.1
Putative secreted protein; Pfam:pfam13628 Domain of unknown function (DUF4142).
 
  
 0.711
ALV05094.1
Amino acid ABC transporter permease; Pfam:pfam04069 Substrate binding domain of ABC-type glycine betaine transport system.
  
    0.677
ALV06467.1
Hypothetical protein.
 
      0.628
ALV06562.1
Two component hybrid sensor histidine kinase/response regulator protein; Pfam:pfam05227 CHASE3 domain.
  
    0.596
ALV06532.1
Integral membrane sensor hybrid histidine kinase; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
    0.589
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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