STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV04732.1YeeE/YedE family protein; Pfam:pfam14241 Domain of unknown function (DUF4341). (144 aa)    
Predicted Functional Partners:
ALV04731.1
Membrane protein; Pfam:pfam04143 Sulphur transport.
   
 0.978
ALV04733.1
Pfam:pfam01022 Bacterial regulatory protein, arsR family.
 
     0.861
ALV04734.1
Beta-lactamase; Pfam:pfam00753 Metallo-beta-lactamase superfamily.
 
     0.762
ALV07255.1
SirA family protein; Pfam:pfam01206 Sulfurtransferase TusA; Belongs to the sulfur carrier protein TusA family.
  
  
 0.661
cmk
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate; Belongs to the cytidylate kinase family. Type 1 subfamily.
 
    0.612
ALV04737.1
Molybdate ABC transporter, ATP-binding protein; Pfam:pfam00005 ABC transporter.
  
    0.477
cbiD
cobalt-precorrin-6A synthase; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.
   
    0.446
ALV08359.1
Pfam:pfam01077 Nitrite and sulphite reductase 4Fe-4S domain.
   
    0.407
ALV09236.1
Pfam:pfam00916 Sulfate transporter family.
 
    0.404
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.