STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV06781.1Pfam:pfam01047 MarR family. (172 aa)    
Predicted Functional Partners:
ALV06780.1
Organic hydroperoxide resistance protein; Pfam:pfam02566 OsmC-like protein.
  
 0.935
ALV05094.1
Amino acid ABC transporter permease; Pfam:pfam04069 Substrate binding domain of ABC-type glycine betaine transport system.
  
  
 0.547
ALV06782.1
ABC transporter-like protein; Pfam:pfam12848 ABC transporter.
       0.528
ALV06783.1
Pfam:pfam05175 Methyltransferase small domain; Belongs to the protein N5-glutamine methyltransferase family.
       0.519
dapE
Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
       0.519
ALV06785.1
Twitching motility protein PilU PilT like; Pfam:pfam00437 Type II/IV secretion system protein.
       0.512
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.