STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV06894.1Pfam:pfam10982 Protein of unknown function (DUF2789). (76 aa)    
Predicted Functional Partners:
ALV07950.1
Putative metal-dependent hydrolase; Pfam:pfam01863 Protein of unknown function DUF45.
 
     0.621
ALV07530.1
Pfam:pfam00924 Mechanosensitive ion channel.
  
     0.562
ALV06895.1
Hypothetical protein; Pfam:pfam14417 MEDS: MEthanogen/methylotroph, DcmR Sensory domain.
       0.542
ALV07328.1
Pfam:pfam01323 DSBA-like thioredoxin domain.
  
    0.535
ALV06896.1
Response regulator; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
       0.532
ALV09210.1
Pfam:pfam01650 Peptidase C13 family.
  
     0.523
ALV04695.1
Pfam:pfam09832 Uncharacterized protein conserved in bacteria (DUF2059).
  
     0.521
ALV06897.1
Pfam:pfam00486 Transcriptional regulatory protein, C terminal.
       0.466
ALV06893.1
Hypothetical protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
       0.462
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.