STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV07040.1Esterase SGNH hydrolase-type subgroup; Pfam:pfam13472 GDSL-like Lipase/Acylhydrolase family. (255 aa)    
Predicted Functional Partners:
ALV07039.1
Pfam:pfam00593 TonB dependent receptor.
 
     0.855
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
     0.753
ALV07080.1
Cellulase; Pfam:pfam00759 Glycosyl hydrolase family 9.
 
 
 0.748
ALV07030.1
Pfam:pfam00544 Pectate lyase.
 
   
 0.668
ALV06799.1
Pfam:pfam03211 Pectate lyase.
  
 
 0.624
ALV05245.1
Major extracellular endoglucanase; Pfam:pfam00150 Cellulase (glycosyl hydrolase family 5).
  
 
 0.605
ALV07036.1
2-deoxy-D-gluconate 3-dehydrogenase; Pfam:pfam00106 short chain dehydrogenase.
 
   
 0.523
ALV07139.1
Arabinogalactan endo-1,4-beta-galactosidase; Pfam:pfam07745 Glycosyl hydrolase family 53.
  
   
 0.520
ALV07038.1
Pectin degradation protein; Pfam:pfam07883 Cupin domain.
 
     0.511
ALV05571.1
Pfam:pfam00544 Pectate lyase.
 
   
 0.509
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.