STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV04802.1Putative binding protein yliB; Pfam:pfam00496 Bacterial extracellular solute-binding proteins, family 5 Middle. (524 aa)    
Predicted Functional Partners:
ALV04798.1
ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
 0.974
ALV04799.1
Peptide ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
 
 0.964
ALV04800.1
Pfam:pfam00005 ABC transporter; Belongs to the ABC transporter superfamily.
 
  
 0.921
ALV04801.1
Peptide ABC transporter ATP-binding protein; Pfam:pfam00005 ABC transporter.
 
  
 0.901
ALV05455.1
ABC transporter permease protein; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
 0.843
ALV05457.1
ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
 
 0.790
ALV04784.1
Peptide transporter; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
 0.786
ALV04785.1
Peptide ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
 0.783
ALV07006.1
Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
 0.736
ALV05459.1
Pfam:pfam00005 ABC transporter; Belongs to the ABC transporter superfamily.
 
  
 0.713
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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