STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV07553.1Hypothetical protein; Pfam:pfam12833 Helix-turn-helix domain. (562 aa)    
Predicted Functional Partners:
ALV07558.1
Hypothetical protein; Pfam:pfam01052 Surface presentation of antigens (SPOA).
 
     0.584
ALV07551.1
Hypothetical protein; Pfam:pfam13514 AAA domain.
  
     0.500
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.459
ALV07504.1
Pfam:pfam13411 MerR HTH family regulatory protein.
  
 
 
 0.429
ALV07556.1
Type III secretion protein, HrcV family; Pfam:pfam00771 FHIPEP family.
     
 0.423
ALV07554.1
Hypothetical protein; Pfam:pfam00583 Acetyltransferase (GNAT) family.
       0.414
ALV07555.1
Type III secretion protein, YscU/HrpY family; Pfam:pfam01312 FlhB HrpN YscU SpaS Family.
       0.414
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.