STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV07636.1Lipoprotein-releasing system ATP-binding protein LolD; Pfam:pfam00005 ABC transporter. (221 aa)    
Predicted Functional Partners:
ALV07637.1
ABC-type transport system, involved in lipoprotein release, permease component; Pfam:pfam02687 FtsX-like permease family.
 
  
 0.869
ALV06197.1
Membrane protein; Pfam:pfam12704 MacB-like periplasmic core domain.
 
 
 0.853
ALV07638.1
Secreted hydrolase-like protein; Pfam:pfam07143 Hydroxyneurosporene synthase (CrtC).
     
 0.841
ALV06158.1
Cell division protein FtsX; Pfam:pfam12704 MacB-like periplasmic core domain.
  
 
 0.831
miaA
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
       0.804
ALV07634.1
Pfam:pfam00849 RNA pseudouridylate synthase; Belongs to the pseudouridine synthase RsuA family.
       0.797
ALV06196.1
Membrane protein; Pfam:pfam02687 FtsX-like permease family.
 
 0.793
ALV07696.1
ABC transporter permease; Pfam:pfam02687 FtsX-like permease family.
 
 
 0.778
lolA
Membrane protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.772
ALV07697.1
ABC transporter ATP-binding protein; Pfam:pfam12704 MacB-like periplasmic core domain.
 
 
 0.722
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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