STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV04823.1Carbohydrate ABC transporter membrane protein 2, CUT1 family. (270 aa)    
Predicted Functional Partners:
ALV04822.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
 0.996
ALV04820.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Pfam:pfam00005 ABC transporter; Belongs to the ABC transporter superfamily.
 
 0.995
ALV04821.1
Pfam:pfam00005 ABC transporter; Belongs to the ABC transporter superfamily.
 
 0.995
ALV04825.1
ABC-type sugar transport system, periplasmic component.
 
 0.992
ALV04824.1
Membrane protein; Pfam:pfam09928 Predicted small integral membrane protein (DUF2160).
 
    0.948
ALV04819.1
Glycerol-3-phosphate dehydrogenase; Pfam:pfam01266 FAD dependent oxidoreductase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
     
 0.806
ALV06017.1
Permease component of ABC-type sugar transporter; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
 0.747
ALV07588.1
Sugar ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
 0.721
ALV08426.1
Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
 0.706
ALV04818.1
DeoR faimly transcriptional regulator; Pfam:pfam00455 DeoR C terminal sensor domain.
 
   
 0.703
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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