STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV07799.1ACP synthase; Pfam:pfam10620 Phosphoribosyl-dephospho-CoA transferase MdcG. (222 aa)    
Predicted Functional Partners:
mdcB
2-(5'-triphosphoribosyl)-3'-dephospho CoA synthase; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.
 
  
  0.975
ALV07800.1
Pfam:pfam06833 Malonate decarboxylase gamma subunit (MdcE).
 
     0.953
ALV07802.1
Malonate decarboxylase acyl carrier protein; Pfam:pfam06857 Malonate decarboxylase delta subunit (MdcD).
 
     0.953
ALV07801.1
Malonate decarboxylase, beta subunit; Pfam:pfam01039 Carboxyl transferase domain.
 
     0.952
ALV07803.1
Malonate decarboxylase, alpha subunit.
 
     0.950
ALV07797.1
Pfam:pfam00698 Acyl transferase domain.
 
   
 0.905
ALV07805.1
C4-dicarboxylate ABC transporter; Pfam:pfam04290 Tripartite ATP-independent periplasmic transporters, DctQ component.
 
     0.839
ALV07806.1
C4-dicarboxylate ABC transporter; Pfam:pfam03480 Bacterial extracellular solute-binding protein, family 7.
 
     0.800
ALV07804.1
C4-dicarboxylate ABC transporter; Pfam:pfam06808 DctM-like transporters.
       0.773
ALV09172.1
Hypothetical protein; Pfam:pfam14344 Domain of unknown function (DUF4397).
  
     0.723
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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