STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV07862.1Flavodoxin domain-containing protein. (61 aa)    
Predicted Functional Partners:
ALV07863.1
Hypothetical protein; Pfam:pfam14078 Domain of unknown function (DUF4259).
 
     0.544
ALV04656.1
Ferritin Dps family protein; Pfam:pfam00210 Ferritin-like domain; Belongs to the Dps family.
  
  
 0.531
ALV07151.1
DNA-binding protein; Pfam:pfam00210 Ferritin-like domain; Belongs to the Dps family.
  
  
 0.531
ALV07861.1
Thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase; Pfam:pfam02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Belongs to the TPP enzyme family.
  
    0.520
ALV04611.1
Putative Ser protein kinase; Pfam:pfam08298 PrkA AAA domain.
   
    0.510
ALV07860.1
RNA-binding protein; Pfam:pfam13275 S4 domain.
       0.504
ALV08406.1
Pfam:pfam00313 'Cold-shock' DNA-binding domain.
  
     0.473
ALV07055.1
Hypothetical protein.
   
  
 0.472
ALV05103.1
Putative signal peptide protein; Pfam:pfam01476 LysM domain.
   
  
 0.472
ALV06667.1
Hypothetical protein; Pfam:pfam09588 YqaJ-like viral recombinase domain.
  
     0.445
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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