STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV08026.1Serine protease, S9A family peptidase; Pfam:pfam00326 Prolyl oligopeptidase family. (708 aa)    
Predicted Functional Partners:
ALV08027.1
Pfam:pfam06041 Bacterial protein of unknown function (DUF924).
       0.676
ALV09071.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase; Pfam:pfam00326 Prolyl oligopeptidase family.
  
   
 0.568
ALV08025.1
Pfam:pfam07152 YaeQ protein.
       0.564
ALV08915.1
Pfam:pfam05649 Peptidase family M13.
  
  
 0.457
ALV05341.1
Pfam:pfam05649 Peptidase family M13.
  
  
 0.416
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.