node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ALV06338.1 | ALV08150.1 | RD2015_1859 | RD2015_3695 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | DNA mismatch repair protein MutS; Pfam:pfam01713 Smr domain. | 0.646 |
ALV06338.1 | ispH | RD2015_1859 | RD2015_3692 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. | 0.915 |
ALV06338.1 | rplX | RD2015_1859 | RD2015_566 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.978 |
ALV06338.1 | rpmD | RD2015_1859 | RD2015_573 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Pfam:pfam00327 Ribosomal protein L30p/L7e. | 0.969 |
ALV06338.1 | rpmG | RD2015_1859 | RD2015_1982 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Pfam:pfam00471 Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.900 |
ALV06338.1 | rpsG | RD2015_1859 | RD2015_550 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.992 |
ALV06338.1 | rpsL | RD2015_1859 | RD2015_549 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.992 |
ALV06338.1 | rpsT | RD2015_1859 | RD2015_3634 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.819 |
ALV08148.1 | ALV08149.1 | RD2015_3693 | RD2015_3694 | Pfam:pfam00254 FKBP-type peptidyl-prolyl cis-trans isomerase. | DNA repair protein; Pfam:pfam04002 RadC-like JAB domain; Belongs to the UPF0758 family. | 0.614 |
ALV08148.1 | ALV08150.1 | RD2015_3693 | RD2015_3695 | Pfam:pfam00254 FKBP-type peptidyl-prolyl cis-trans isomerase. | DNA mismatch repair protein MutS; Pfam:pfam01713 Smr domain. | 0.693 |
ALV08148.1 | ispH | RD2015_3693 | RD2015_3692 | Pfam:pfam00254 FKBP-type peptidyl-prolyl cis-trans isomerase. | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. | 0.939 |
ALV08149.1 | ALV08148.1 | RD2015_3694 | RD2015_3693 | DNA repair protein; Pfam:pfam04002 RadC-like JAB domain; Belongs to the UPF0758 family. | Pfam:pfam00254 FKBP-type peptidyl-prolyl cis-trans isomerase. | 0.614 |
ALV08149.1 | ALV08150.1 | RD2015_3694 | RD2015_3695 | DNA repair protein; Pfam:pfam04002 RadC-like JAB domain; Belongs to the UPF0758 family. | DNA mismatch repair protein MutS; Pfam:pfam01713 Smr domain. | 0.804 |
ALV08149.1 | ispH | RD2015_3694 | RD2015_3692 | DNA repair protein; Pfam:pfam04002 RadC-like JAB domain; Belongs to the UPF0758 family. | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. | 0.608 |
ALV08150.1 | ALV06338.1 | RD2015_3695 | RD2015_1859 | DNA mismatch repair protein MutS; Pfam:pfam01713 Smr domain. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.646 |
ALV08150.1 | ALV08148.1 | RD2015_3695 | RD2015_3693 | DNA mismatch repair protein MutS; Pfam:pfam01713 Smr domain. | Pfam:pfam00254 FKBP-type peptidyl-prolyl cis-trans isomerase. | 0.693 |
ALV08150.1 | ALV08149.1 | RD2015_3695 | RD2015_3694 | DNA mismatch repair protein MutS; Pfam:pfam01713 Smr domain. | DNA repair protein; Pfam:pfam04002 RadC-like JAB domain; Belongs to the UPF0758 family. | 0.804 |
ALV08150.1 | ispH | RD2015_3695 | RD2015_3692 | DNA mismatch repair protein MutS; Pfam:pfam01713 Smr domain. | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. | 0.608 |
ALV08150.1 | rplX | RD2015_3695 | RD2015_566 | DNA mismatch repair protein MutS; Pfam:pfam01713 Smr domain. | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.636 |
ALV08150.1 | rpmD | RD2015_3695 | RD2015_573 | DNA mismatch repair protein MutS; Pfam:pfam01713 Smr domain. | Pfam:pfam00327 Ribosomal protein L30p/L7e. | 0.651 |