STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV08421.1Glucarate dehydratase; Pfam:pfam13378 Enolase C-terminal domain-like; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (443 aa)    
Predicted Functional Partners:
ALV08625.1
Pfam:pfam04295 D-galactarate dehydratase / Altronate hydrolase, C terminus.
 
 
 0.982
ALV08419.1
Pfam:pfam03328 HpcH/HpaI aldolase/citrate lyase family; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.973
ALV08922.1
Pfam:pfam00171 Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family.
     
 0.905
ALV08626.1
D-galactonate transporter; Pfam:pfam07690 Major Facilitator Superfamily.
 
  
 0.739
ALV08423.1
GntR family transcriptional regulator; Pfam:pfam07729 FCD domain.
 
   
 0.614
ALV08418.1
2-hydroxy-3-oxopropionate reductase; Pfam:pfam03446 NAD binding domain of 6-phosphogluconate dehydrogenase.
 
  
 0.591
ALV06014.1
Hypothetical protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
  
    0.571
ALV08420.1
ABC transporter substrate-binding protein; Pfam:pfam03401 Tripartite tricarboxylate transporter family receptor.
       0.491
ALV08422.1
Putative lipoprotein; Pfam:pfam03401 Tripartite tricarboxylate transporter family receptor.
       0.479
ALV07260.1
Pfam:pfam00175 Oxidoreductase NAD-binding domain.
  
  
 0.473
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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